This page contains an outline of my research: the details can be found from the links
My research concentrates on protein structure and function,
mainly by means of NMR, and is described in more detail below.
I also teach NMR and protein structure, as well as numerical and
statistical methods.
I was a reviewer for the HEFCE QAA Molecular Biosciences reviews in
1998-2000, and
coincidentally led the MBB submission, in which we got 24/24. I also
headed up the departmental
Independent Evaluation of Teaching in 2008, which was also highly
complimentary of our teaching.
I have been involved in a number of University committees, mostly on
admissions, finance and personnel.
From 2009-2011 I was Chair of the
UK
NMR discussion group,
and was also (2009-2012) Chair of the Biochemical Society theme panel II
(Molecular structure and function).
I am a member of BBSRC Committee D (Molecules, Cells and Industrial
Biotechnology) and a fellow of the Royal
Society of Chemistry.
From 2005-2009 I was secretary of Euromar,
a group that organises annual European
magnetic resonance meetings.
I was on sabbatical in Osaka, Japan from September 2008 until
September 2009, mainly to write a book, entitled How Proteins Work,
published
by Garland Press in July 2011.
During my PhD I used NMR to look at the structure and interactions of
antibiotics mainly related to
vancomycin,
still a vital drug in the constant battle against bacterial drug
resistance. This led to an interest in the NOE,
where I worked first on 1D NOEs, showing that by using a viscous solvent
you can make small molecules behave like bigger ones,
and determined the definitive structure of vancomycin.
Around this time, Wüthrich was developing 2D NMR as a way of studying
proteins, so after my PhD I got a
research fellowship to work in his lab, where I was lucky enough to work
on the first NMR structure of
a globular protein (see his
2002 Nobel Prize lecture).
Since then, I have worked both on NMR methodology and on determination of protein structures by NMR. In methodology, I have worked in three main areas:
The nuclear Overhauser effect (NOE) (link for more detail)
Chemical shifts in proteins (link for more detail)
Relaxation (link
for more detail)
Carbohydrate Binding Modules (link for more detail)
These are protein modules that are used to attach degradative enzymes to
their substrate, such as starch,
cellulose, xylan and other cell-wall constituents. Our main interest has
been in how they recognise
specifically their targets, which are chemically very similar: it turns
out to be
mainly steric rather than using hydrogen bonding. The work has mainly
been structural, though
we have also worried about enthalpy and entropy, and even a bit of
enzymology.
The bacterial light-harvesting complex (link for more detail)
This is a large membrane complex, which traps sunlighht and feeds it to
the reaction centre. We have used
organic solvents and micelles to study some of the component peptides.
When combined with other work, in
particular electron microscopy and atomic force microscopy, together
with a large body of mutagenesis and
functional studies, this has allowed us to construct an atomic model of
the entire complex.
Salivary proline-rich proteins and plant polyphenols (link for more detail)
Salivary proline-rich proteins (PRPs) are the major proteins in parotid
saliva. A major function appears to be to bind to plant polyphenols
(tannins),
which we consume in tea, coffee, wine and many fruits and cereals and
are responsible for the
sensation of astringency.
They are unstructured proteins, so their binding is quite different from
the more specific interactions
that we are more used to seeing for proteins. The study has involved NMR
as well as a wide range of
other biophysical techniques.
This work has also led to two major reviews of proline-rich regions, and
a study suggesting that
EGCG, the main polyphenol in green tea, may be able to slow down HIV
infection.
The RegAB two-component signalling system (link for more detail)
This is a classic bacterial two-component signalling system, in which an
external stimulus
(in this case oxygen tension) leads to phosphorylation of a
membrane-bound kinase, which
then phosphorylates an intracellular response regulator. The
phosphorylated regulator undergoes
a conformational change, binds to DNA and alters transcription.
We showed how this works, and how the DNA is recognised.
More recently we have started work on intrinsically unstructured proteins using a variety of techniques but mainly residual dipolar couplings. Watch this space...
We have undertaken a variety of NMR-related projects, mostly with local academics. These include
I have also written a number of reviews, including a recent Perspective on automated protein structure calculation and an update on NOEs in molecular biology.
I am a keen musician (when I have the time!). I play
string bass and bass guitar for a
jazz band. I play the cello and bass, as a member of
various orchestras, and also in quartets etc. for relaxation.
I also ring bells, as a member of the band at Sheffield Cathedral,
a 12-bell tower in the
Yorkshire Association of Change Ringers.
Iwadate M, Asakura T, Dubovskii PV, Yamada H, Akasaka K, Williamson MP
Pressure-dependent changes in the structure of the melittin alpha-helix
determined by NMR
J Biomol NMR. 2001 19(2):115-24
Xie H, Bolam DN, Nagy T, Szabo L, Cooper A, Simpson PJ, Lakey JH,
Williamson MP, Gilbert HJ
Role of hydrogen bonding in the interaction between a xylan binding
module and xylan
Biochemistry.
2001 40(19):5700-7
Bolam DN, Xie H, White P, Simpson PJ, Hancock SM, Williamson MP, Gilbert
HJ
Evidence for synergy between family 2b carbohydrate binding modules in
Cellulomonas fimi xylanase 11A
Biochemistry.
2001 40(8):2468-77
Leighton MP, Kelly DJ, Williamson MP, Shaw JG
An NMR and enzyme study of the carbon metabolism of Neisseria
meningitidis
Microbiology. 2001 147(6):1473-82
Xie H, Gilbert HJ, Charnock SJ, Davies GJ, Williamson MP, Simpson PJ,
Raghothama S, Fontes CM, Dias FM, Ferreira LM, Bolam DN
Clostridium thermocellum Xyn10B carbohydrate-binding module 22-2: the
role of conserved amino acids in ligand binding
Biochemistry.
2001 40(31):9167-76
Raghothama S, Eberhardt RY, Simpson P, Wigelsworth D, White P, Hazlewood
GP, Nagy T, Gilbert HJ, Williamson MP
Characterization of a cellulosome dockerin domain from the anaerobic
fungus Piromyces equi
Nat Struct Biol. 2001 8(9):775-8
Charlton AJ, Baxter NJ, Khan ML, Moir AJ, Haslam E, Davies AP,
Williamson MP
Polyphenol/peptide binding and precipitation
J
Agric Food Chem. 2002 50(6):1593-601
Simpson PJ, Jamieson SJ, Abou-Hachem M, Karlsson EN, Gilbert HJ, Holst
O, Williamson MP
The solution structure of the CBM4-2 carbohydrate binding module from a
thermostable Rhodothermus marinus xylanase
Biochemistry.
2002 41(18):5712-9
Abou-Hachem M, Karlsson EN, Simpson PJ, Linse S, Sellers P, Williamson
MP, Jamieson SJ, Gilbert HJ, Bolam DN, Holst O
Calcium binding and thermostability of carbohydrate binding module
CBM4-2 of Xyn10A from Rhodothermus marinus
Biochemistry.
2002 41(18):5720-9
Potter CA, Ward A, Laguri C, Williamson MP, Henderson PJ, Phillips-Jones
MK
Expression, Purification and Characterisation of Full-length Histidine
Protein Kinase RegB from Rhodobacter sphaeroides
J
Mol Biol 2002 320(2):201-13
Charlton AJ, Haslam E, Williamson MP
Multiple conformations of the proline-rich protein/epigallocatechin
gallate complex determined by time-averaged nuclear Overhauser effects
J
Am Chem Soc 2002 124(33):9899-905
Horsburgh GJ, Atrih A, Williamson MP, Foster SJ.
LytG of Bacillus subtilis is a novel peptidoglycan hydrolase: the major
active
glucosaminidase.
Biochemistry
2003
42(2):257-64
Refaee M, Tezuka T, Akasaka K, Williamson MP
Pressure-dependent changes in the solution structure of hen egg-white
lysozyme
J
Mol Biol 2003 327(4):857-65
Pell G, Williamson MP, Walters C, Du H, Gilbert HJ, Bolam DN
Importance of hydrophobic and polar residues in ligand binding in the
family 15 carbohydrate-binding module from Cellvibrio japonicus Xyn10C
Biochemistry.
2003 42(31):9316-23
Williamson MP, Akasaka K, Refaee M
The solution structure of bovine pancreatic trypsin inhibitor at high
pressure
Protein
Sci. 2003 12(9):1971-9
Williamson MP
Many residues in cytochrome c populate alternative states under
equilibrium conditions
Proteins.
2003 53(3):731-9
Laguri C, Phillips-Jones MK, Williamson MP
Solution structure and DNA binding of the effector domain from the
global regulator PrrA (RegA) from Rhodobacter sphaeroides: insights
into DNA binding specificity
Nucleic
Acids Res. 2003 31(23):6778-87
Joebstl E, O'Connell J, Fairclough JP, Williamson MP
Molecular model for astringency produced by polyphenol/protein
interactions.
Biomacromolecules.
2004 5(3):942-9
Bocian W, Kawecki R, Bednarek E, Sitkowski J, Pietrzyk A, Williamson MP,
Hansen PE, Kozerski L
Multiple binding modes of the camptothecin family to DNA oligomers.
Chemistry,
a European Journal. 2004 10(22):5776-87.
Exley RM, Shaw J, Mowe E, Sun Y-H, West NP, Williamson MP, Botto, M,
Smith H, Tang CM
Available carbon source influences the resistance of Neisseria
meningitidis against complement.
J Exp Med. 2005;201:1637-1645
Flint J, Bolam DN, Nurizzo D, Taylor EJ, Williamson MP, Walters C,
Davies GJ, Gilbert HJ
Probing the mechanism of ligand recognition in family 29 carbohydrate
binding
J
Biol Chem. 2005 280:23718-23726
Williamson MP.
Systems biology: will it work?
Biochem
Soc Trans. 2005 33(3):503-6
Joebstl E, Fairclough JP, Davies AP, Williamson MP
Creaming in black tea
J
Agric Food Chem. 2005 53(20):7997-8002
Tunnicliffe RB, Waby JL, Williams RJ, Williamson MP
An experimental investigation of conformational fluctuations in proteins
G and L
Structure.
2005 13(11):1677-84
Potter CA, Jeong EL, Williamson MP, Henderson PJ, Phillips-Jones MK
Redox-responsive in vitro modulation of the signalling state of
the isolated PrrB sensor kinase of Rhodobacter sphaeroides NCIB
8253
FEBS
Lett. 2006 580(13):3206-10
Joebstl E, Howse JR, Fairclough JP, Williamson MP
Noncovalent Cross-Linking of Casein by Epigallocatechin Gallate
Characterized by Single Molecule Force Microscopy
J
Agric Food Chem. 2006 54(12):4077-4081
Laguri C, Stenzel RA, Donohue TJ, Phillips-Jones MK, Williamson MP
Activation of the global gene regulator PrrA (RegA) from Rhodobacter
sphaeroides
Biochemistry.
2006 45(25):7872-81
Williamson MP, Suzuki Y, Bourne NT, Asakura T
Binding of amyloid beta to ganglioside micelles is dependent on
histidine 13
Biochem
J. 2006 397(3):483-90
Williamson MP, McCormick TG, Nance CL, Shearer WT
Epigallocatechin gallate, the main polyphenol in green tea, binds to the
T-cell receptor, CD4: Potential for HIV-1 therapy
J
Allergy Clin Immunol. 2006 118(6):1369-74
Tunnicliffe RB, Ratcliffe EC, Hunter CN, Williamson MP
The solution structure of the PufX polypeptide from Rhodobacter
sphaeroides
FEBS
Letts 2006 580(30):6967-71
Williamson MP
The Nuclear Overhauser Effect
in Modern Magnetic Resonance (Ed Asakura T, Saito H, Ando I) Vol 1
Chemistry
Kluwer Academic Press 2006 405-408
Williamson MP
The transferred NOE
in Modern Magnetic Resonance (Ed Craik D) Vol 2 Medical Uses
Kluwer Academic Press 2006 1339-1344
Cicortas Gunnarsson L, Montanier C, Tunnicliffe RB, Williamson MP,
Gilbert HJ, Nordberg Karlsson E, Ohlin M
Novel xylan-binding properties of an engineered family 4
carbohydrate-binding module
Biochem J. 2007 406(2):209-14
Nagy T, Tunnicliffe RB, Higgins LD, Walters C, Gilbert HJ, Williamson MP
Characterization of a double dockerin from the cellulosome of the
anaerobic fungus Piromyces equi
J Mol Biol. 2007 373(3):612-22
Bocian W, Kawecki R, Bednarek E, Sitkowski J, Williamson MP, Hansen PE,
Kozerski L
Binding of topotecan to a nicked DNA oligomer in solution
Chemistry a European
Journal 2008;14(9):2788-94
Wilton DJ, Ghosh M, Chary KV, Akasaka K, Williamson MP
Structural change in a B-DNA helix with hydrostatic pressure
Nucleic Acids Res. 2008 36(12):4032-7
Williamson MP, Craven CJ
Automated protein structure calculation from NMR data
J Biomol NMR. 2009 43(3):131-143
Williamson MP
NOESY
in Encyclopedia of Magnetic Resonance (Ed Harris RK, Wasylishen
R) John Wiley, Chichester 2009
Williamson MP
Applications of NOEs in molecular biology
Annual Reports on NMR 2009 65 Ch 3, pp 77-109
Nakazawa Y, Suzuki Y, Williamson MP, Saito H, Asakura T
The interaction of amyloid Abeta(1-40) with lipid bilayers and
ganglioside as studied by 31P solid-state NMR
Chem Phys Lipids 2009 158(1):54-60
Tomlinson JH, Ullah S, Hansen PE, Williamson MP
Characterisation of salt bridges to lysines in the Protein G B1 domain
J Am Chem Soc 2009 131(13):4674-84
Wilton DJ, Kitahara R, Akasaka K, Williamson MP
Pressure-dependent 13C chemical shifts in proteins: origins
and applications
J Biomol NMR 2009 44(1):25-33
Suzuki Y, Takahashi R, Shimizu T, Tansho M, Yamauchi K, Williamson MP,
Asakura T
Intra- and intermolecular effects on 1H chemical shifts in a
silk model peptide determined by high-field solid state 1H
NMR and empirical calculations
J Phys Chem B 2009 113(29):9756-61
Wilton DJ, Kitahara R, Akasaka K, Pandya MJ, Williamson MP
Pressure-dependent structure changes in barnase on ligand binding reveal
intermediate rate fluctuations
Biophys J 2009 97(5):1482-90
Long J, Garner TP, Pandya MJ, Craven CJ, Chen P, Shaw B, Williamson MP,
Layfield R, Searle MS
Dimerisation of the UBA domain of p62 inhibits ubiquitin binding and
regulates NF-kappaB signalling
J Mol Biol 2010 396(1):178-194
Tomlinson JH, Craven CJ, Williamson MP, Pandya MJ
Dimerization of protein G B1 domain at low pH: a conformational switch
caused by loss of a single hydrogen bond
Proteins: Struct Funct Bioinf 2010 78:1652-1661
Waywell P, Gonzalez V, Gill MR, Adams H, Meijer AJHM, Williamson MP,
Thomas JA
Structure of the complex of [Ru(tpm)(dppz)py]2+ with a B-DNA
oligonucleotide - a single-residue binding switch for a
metallo-intercalator
Chem Eur J 2010 16(8):2407-2417
Giamarchi A, Feng S, Rodat-Despoix L, Xu Y, Bubenshchikova E, Newby LJ,
Hao J, Gaudioso C, Crest M, Lupas AN, Honoré, Williamson MP, Obara T,
Ong AC, Delmas P
A polycystin-2 dimerization domain essential for the function of
heteromeric polycystin complexes
EMBO J. 2010 29(7):1176-1191
Wilson T, Williamson MP, Thomas JA
Differentiating quadruplexes: binding preferences of a luminescent
dinuclear ruthenium(II) complex with four-stranded DNA structures
Org Biomol Chem 2010 8(11):2617-21
Correia MA, Abbott DW, Gloster TM, Fernandes VO, Prates JA, Montanier C,
Dumon C, Williamson MP, Tunnicliffe RB, Liu Z, Flint JE,
Davies GJ, Henrissat B, Coutinho PM, Fontes CM, Gilbert HJ
Signature active site architectures illuminate the molecular basis for
ligand specificity in family 35 carbohydrate binding module
Biochemistry 2010 49(29):6193-205
Williamson MP, Sutcliffe MJ
Protein-protein interactions
Biochem Soc Trans 2010 38(4):875-8
Tomlinson JH, Green VL, Baker PJ, Williamson MP
Structural origins of pH-dependent chemical shifts in the B1 domain of
protein G
Proteins 2010 78(14):3000-16
Ullah S, Ishimoto T, Williamson MP, Hansen PE
Ab initio calculations of deuterium isotope effects on chemical
shifts of salt-bridged lysines
J Phys Chem B 2011 115(12):3208-3215
Trotter EW, Rolfe MD, Hounslow AM, Craven CJ, Williamson MP, Sanguinetti G, Poole RK, Green J
Reprogramming of Escherichia coli K-12 metabolism during the initial phase of transition from an anaerobic to a micro-aerobic environment
PLoS One 2011 6(9):e25501
Asakura T, Okonogi M, Horiguchi K, Aoki A, Saitô H, Knight DP, Williamson MP
Two different packing arrangements of antiparallel polyalanine
Angewandte Chemie Int Ed
2012 51(5) 1212-1215
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Last updated: 16 Apr 2011 by Mike Williamson.